Bioinformatician at SciLifeLab

Job Description:

Latest job information from SciLifeLab for the position of Bioinformatician. If the Bioinformatician vacancy in Uppsala matches your qualifications, please submit your latest application or CV directly through the updated Jobkos job portal.

Please note that applying for a job may not always be easy, as new candidates must meet certain qualifications and requirements set by the company. We hope the career opportunity at SciLifeLab for the position of Bioinformatician below matches your qualifications.

Uppsala University, Department of Pharmaceutical BiosciencesThe Department of Pharmaceutical Biosciences is an interdisciplinary environment where 10 research areas work to contribute to better medicines and a healthier world. With laboratories in the heart of Uppsala Biomedical Center and Sweden's only Faculty of Pharmacy, we are a vital engine in the development of education and research in the pharmaceutical sciences. More information about the department and its activities is available atThe infrastructure platform "Spatial Biology" at SciLifeLab is currently in a strong phase of expansion and is investing in the development of advanced methods for the integrated analysis of biological systems. We are now recruiting three bioinformaticians specializing within the field of spatial transcriptomics, spatial proteomics and spatial mass spectrometry, respectively. Together, you will form a data analysis team working to develop tools and methods for integrated multi-omics studies.

As a member of this team, you will play a key role in developing computational methods, analyzing complex datasets, and contributing to integrative omics efforts in close collaboration with researchers from various disciplines. The roles offer significant opportunities to influence both technological development and scientific direction in a rapidly growing research field.

Candidates with relevant competences are encouraged to apply for all three positions to increase chances of forming a strong and complementary team. Close dialogues will be held between the recruiting units during the process.

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We are looking for a motivated and skilled bioinformatician to join the Spatial Mass Spectrometry Unit,with a focus on the analysis, management, and integration of spatially resolved metabolomics and proteomics data generated through advanced mass spectrometry imaging (MSI) technologies.

The employment will be placed at the Department of Pharmaceutical Biosciences , at Uppsala University.

Key Responsibilities

• Perform comprehensive analysis of complex imaging mass spectrometry datasets (e.g., MALDI-MSI, DESI-MSI) using established computational frameworks
• Develop and implement novel algorithms and visual analytics for spatial mapping of metabolites, lipids, and proteins
• Ensure that data handling complies with FAIR (Findable, Accessible, Interoperable, Reusable) principles, including metadata standardization and long-term data stewardship
• Provide expert bioinformatics support at all stages of imaging mass spectrometry projects – from experimental design and data acquisition to advanced multivariate statistical modeling and biological interpretation
• Contribute to integrative spatial omics efforts by combining mass spectrometry data with other modalities (e.g., transcriptomics, proteomics, histology, clinical metadata)

Qualifications And Experience

• A PhD in bioinformatics, computational biology, systems biology, or a related field, or equivalent scientific expertise
• Proficiency in Python and R, particularly for data analysis, visualization, and manipulation of high-dimensional imaging and mass spectrometry data
• Experience in designing and maintaining reproducible and scalable analysis workflows
• Solid foundation in statistics and machine learning to omics data
• Familiarity with public data standards and repositories relevant to metabolomics/proteomics
• Excellent written and verbal communication skills in English
• Proven ability to collaborate effectively within interdisciplinary research teams, fostering productive cross-disciplinary communication and teamwork.

Desirable/meritorious

• Hands-on experience with mass spectrometry imaging data processing
• Knowledge of tissue segmentation, spatial registration, or histology-based data alignment
• Familiarity with high-performance computing environments or cloud-based data analysis platforms

About The EmploymentThe employment is a permanent position (probationary period 6 months will be applied) Scope of employment 100 %. Starting date as agreed upon. Placement: Uppsala

For further information about the position please contact:Professor Per Andrén, e mail: and Associate Professor Anna Nilsson, e-mail:

Please submit your application by October 31th 2025, UFV-PA 2025/2824Uppsala University is a broad research university with a strong international position. The ultimate goal is to conduct education and research of the highest quality and relevance to make a difference in society. Our most important asset is all of our 7,600 employees and 53,000 students who, with curiosity and commitment, make Uppsala University one of Sweden's most exciting workplaces.

Read more about our benefits and what it is like to work at Uppsala University

The position may be subject to security vetting. If security vetting is conducted, the applicant must pass the vetting process to be eligible for employment.

Please do not send offers of recruitment or advertising services.

Submit your application through Uppsala University's recruitment system.

Job Info:

• Company: SciLifeLab
• Position: Bioinformatician
• Work Location: Uppsala
• Country: SE

How to Submit an Application:

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